Tuesday, August 28, 2007

mtDNA Results

mtDNA Results

Your Haplogroup and mutations relative to the Cambridge Reference Sequence (CRS) are shown below. A value of CRS indicates no mutations. High resolution (HVR2) results are shown only if you have requested the mtDNAPlus or mtDNA Refine test. If you ordered a Mega mtDNA the Coding Region (CR) will be displayed below.
Understanding your results.

As you go through your mtDNA results, we strongly encourage you to read the mtDNA Results Tutorial that we have put together in the form of frequently asked questions about mtDNA results.


HVR1 HaplogroupU5a1a

HVR1 differences

from CRS

16157C
16192T
16256T
16270T
16320T
16399G


Copy and paste this table only to Excel or Word. You may need to adjust column widths in Excel after the paste operation.


U5a1a Specific mitochondrial haplogroups are typically found in different regions of the world, and this is due to unique population histories. In the process of spreading around the world, many populations—with their special mitochondrial haplogroups—became isolated, and specific haplogroups concentrated in geographic regions. Today, we have identified certain haplogroups that originated in Africa, Europe, Asia, the islands of the Pacific, the Americas, and even particular ethnic groups. Of course, haplogroups that are specific to one region are sometimes found in another, but this is due to recent migration.

The mitochondrial super-haplogroup U encompasses haplogroups U1-U7 and haplogroup K. Haplogroup U5, with its own multiple lineages nested within, is the oldest European-specific haplogroup, and its origin dates to approximately 50,000 years ago. Most likely arising in the Near East, and spreading into Europe in a very early expansion, the presence of haplogroup U5 in Europe pre-dates the expansion of agriculture in Europe. Haplogroup U5a1a—a lineage within haplogroup U5—arose in Europe less than 20,000 years ago, and is mainly found in northwest and north-central Europe. The modern distribution of haplogroup U5a1a suggests that individuals bearing this haplogroup were part of the populations that had tracked the retreat of ice sheets from Europe.


Copyright 2007 Genealogy by Genetics, Ltd.
USAGE POLICY: Use of the above Haplogroup description requires written permission from Genealogy by Genetics.


Cambridge Reference Sequence

The mitochondrion sequenced in 1981 became known as the Cambridge Reference Sequence (CRS) and has been used as a basis for comparison with your mtDNA. In other words, any place in your mtDNA where you have a difference from the CRS, is characterized as a mutation. if your results show no mutations at all, it means that your mtDNA matches the CRS. A mutation happens a) when a base replaces another base - for example a C (Cytosine) replaces an A (Adenine), b) when a base is no longer in that position and c) when a new base is inserted between the other bases without replacing any other. Those mutations are represented below according to the following color code:

a) Mutation at position: RED b) Mutation Deleted: Strike c) Mutation Inserted: Green

As a way to make it possible to display all the positions that are included in your test, please note that when you see "ATTCTAATTT" under 16010, it actually means that 16001 has an A (Adenine), 16002 has a T (Thymine), 16003 has a T (Thymine), 16004 has a C (Cytosine) and so on... Therefore, if your table of mutations above would show "192A" it means that you should see the 3rd "C" under 16192 replaced by a "A".

HVR1 Reference Sequence (Starts At: 16001)
1601016020160301604016050160601607016080
ATTCTAATTTAAACTATTCTCTGTTCTTTCATGGGGAAGCAGATTTGGGTACCACCCAAGTATTGACTCACCCATCAACA
1609016100161101612016130161401615016160
ACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACA
1617016180161901620016210162201623016240
TAAAAACCCAATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCA
1625016260162701628016290163001631016320
ACTGCAACTCCAAAGCCACCCCTCACCCACTAGGATACCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGC
1633016340163501636016370163801639016400
CATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCCTCAGATAGGGGTCCCTTGAC
1641016420164301644016450164601647016480
CACCATCCTCCGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGGGCCCATAACACTTGGGGGTAGCTA
1649016500165101652016530165401655016560
AAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGTCATAAAGCCTAAATAGCCCACACGTTCCCCTTAAATAAGAC
16569
ATCACGATG
HVR2 Reference Sequence (Starts At: 1)
1020304050607080
GATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTCGTCTGGGGGGTATGCACGC
90100110120130140150160
GATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCTCATCCTATTATTTA
170180190200210220230240
TCGCACCTACGTTCAATATTACAGGCGAACATACTTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATA
250260270280290300310320
ACAATTGAATGTCTGCACAGCCACTTTCCACACAGACATCATAACAAAAAATTTCCACCAAACCCCCCCTCCCCCGCTTC
330340350360370380390400
TGGCCACAGCACTTAAACACATCTCTGCCAAACCCCAAAAACAAAGAACCCTAACACCAGCCTAACCAGATTTCAAATTT
410420430440450460470480
TATCTTTTGGCGGTATGCACTTTTAACAGTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAAT
490500510520530540550560
CTCATCAATACAACCCCCGCCCATCCTACCCAGCACACACACACCGCTGCTAACCCCATACCCCGAACCAACCAAACCCC
570580
AAAGACACCCCCCA

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